BtaEX0002319 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018114 | ACVR2A
Description
Bos taurus activin A receptor, type IIA (ACVR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174227]
Coordinates
chr2:48397488-48412130:-
Coord C1 exon
chr2:48411976-48412130
Coord A exon
chr2:48401368-48401391
Coord C2 exon
chr2:48397488-48397631
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTTTTCTTCACAAGCAC
3' ss Score
4.99
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTACGTCGAATCCAGTAACTCCTAAGCCTCCCTATTACAACATCTTGCTCTATTCTTTGGTGCCACTTATGTTAATTGCGGGGATTGTCATTTGTGCATTTTGGGTGTACAGACATCATAAGATGGCTTACCCTCCTGTGCTCGTTCCAACTCAA
Seq A exon
CACGCCTTTCATATAATGATAGAG
Seq C2 exon
GACCCAGGACCACCCCCACCTTCTCCATTACTAGGTTTGAAGCCATTACAGTTACTAGAAGTGAAAGCAAGAGGAAGATTTGGTTGTGTGTGGAAAGCCCAGTTACTCAATGAATATGTGGCTGTGAAAATATTTCCAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018114_MULTIEX1-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Inclusion Isoform:
ENSBTAT00000024108fB370
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGGATTGTCATTTGTGCA
R:
TAATGGAGAAGGTGGGGGTGG
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development