MmuEX0003675 @ mm10
Exon Skipping
Gene
ENSMUSG00000052155 | Acvr2a
Description
activin receptor IIA [Source:MGI Symbol;Acc:MGI:102806]
Coordinates
chr2:48873319-48890441:+
Coord C1 exon
chr2:48873319-48873473
Coord A exon
chr2:48886674-48886697
Coord C2 exon
chr2:48890298-48890441
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTTTTCTTCACAAGCAC
3' ss Score
4.99
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CCACTTCAAATCCTGTTACACCGAAGCCACCCTATTACAACATTCTGCTGTATTCCTTGGTACCACTAATGTTAATTGCAGGAATTGTCATTTGTGCATTTTGGGTGTACAGACATCACAAGATGGCCTACCCTCCTGTACTTGTTCCTACTCAA
Seq A exon
CACGCCTTTCATATAATGATAGAG
Seq C2 exon
GACCCAGGACCACCCCCACCTTCCCCATTACTAGGGTTGAAGCCATTGCAGCTGTTAGAAGTGAAAGCAAGGGGAAGATTTGGTTGTGTCTGGAAAGCCCAGTTGCTCAATGAATATGTGGCTGTCAAAATATTTCCAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052155-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Inclusion Isoform:
ENSMUST00000063886fB300
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTACCCTCCTGTACTTGT
R:
ACAACCAAATCTTCCCCTTGCT
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types