GgaEX0018820 @ galGal3
Exon Skipping
Gene
ENSGALG00000012444 | AVR2A_CHICK
Description
NA
Coordinates
chr7:36163131-36174310:+
Coord C1 exon
chr7:36163131-36163285
Coord A exon
chr7:36170764-36170787
Coord C2 exon
chr7:36174167-36174310
Length
24 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTCCCCCTCAACAAGCAC
3' ss Score
2.81
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CAACTTCCAATCCAGTCACACCGAAGCCACCTCTATTCAATACCTTGCTTTATTCATTGGTGCCTATAATGGGAATTGCAGTGATTGTGCTCTTTTCATTTTGGATGTACAGACATCACAAGCTAGCATATCCTCCAGTACTTGTTCCAACCCAA
Seq A exon
CACGCCTTTCATATAATGATTGAG
Seq C2 exon
GATCCTGGACCACCACCGCCTTCACCATTGATGGGTTTGAAGCCACTGCAGTTGCTAGAGATCAAAGCCAGGGGACGATTTGGGTGTGTGTGGAAAGCTCAGCTGCTGAATGAGTATGTTGCAGTCAAAATATTCCCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012444_MULTIEX1-4/10=3-5
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGTACTTGTTCCAACCC
R:
CAAATCGTCCCCTGGCTTTGA
Band lengths:
106-130
Functional annotations
There are 0 annotated functions for this event