RnoEX0006476 @ rn6
Exon Skipping
Gene
ENSRNOG00000005334 | Acvr2a
Description
activin A receptor type 2A [Source:RGD Symbol;Acc:70911]
Coordinates
chr3:33011789-33021596:+
Coord C1 exon
chr3:33011789-33011964
Coord A exon
chr3:33018053-33018076
Coord C2 exon
chr3:33021453-33021596
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTTTCTTCACAAGCAC
3' ss Score
5.04
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TCATTTCTAGGTAAGACTCTTGCCCAGACTTCCTGGTACTTCCTGGTCTTGACATTTTCCCACCCTGTCTTATGTAATCGTCTCTGAGCCATAGACACAGAAGCAGTGATGCAGATGCACTCTGCCACTCTGCTGTGTCCCCTTTGTCTCCATTTGCTGTAAAGAGAGGCTTCTGG
Seq A exon
CACGCCTTTCATATAATGATAGAG
Seq C2 exon
GACCCTGGACCACCTCCACCTTCCCCATTACTAGGGTTGAAGCCATTGCAGCTATTGGAAGTGAAAGCAAGGGGAAGATTTGGTTGTGTCTGGAAAGCCCAGTTGCTCAATGAGTATGTGGCTGTCAAAATATTTCCGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005334-'6-10,'6-9,7-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Inclusion Isoform:
ENSRNOT00000007404fB568
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGCACTCTGCCACTCTG
R:
GCTGCAATGGCTTCAACCCTA
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]