BtaEX0002320 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018114 | ACVR2A
Description
Bos taurus activin A receptor, type IIA (ACVR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174227]
Coordinates
chr2:48385203-48392436:-
Coord C1 exon
chr2:48392322-48392436
Coord A exon
chr2:48389800-48389938
Coord C2 exon
chr2:48385203-48385333
Length
139 bp
Sequences
Splice sites
3' ss Seq
GCTTTTAACATCTTTTTCAGGTG
3' ss Score
9.8
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGACATCAAAAGTAAAAATGTGCTGTTGAAAAACAATCTGACAGCCTGCATTGCTGACTTTGGGTTGGCGTTAAAGTTTGAGGCTGGCAAGTCTGCAGGTGATACTCATGGACAG
Seq A exon
GTGGGTACCCGAAGGTATATGGCTCCAGAGGTGTTAGAGGGTGCTATCAACTTCCAAAGGGATGCATTTTTGAGGATAGATATGTACGCCATGGGATTAGTCCTGTGGGAACTGGCTTCTCGCTGTACTGCTGCAGATG
Seq C2 exon
GACCTGTAGATGAATACATGCTGCCATTTGAGGAAGAAATTGGCCAGCATCCCTCTCTTGAAGACATGCAGGAAGTTGTTGTGCATAAAAAAAAGAGGCCTGTTTTAAGAGATTATTGGCAGAAACATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018114_MULTIEX1-6/7=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.2=100)
A:
PF0006920=Pkinase=FE(16.0=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATCAAAAGTAAAAATGTGCTGT
R:
AGCATGTTTCTGCCAATAATCTCT
Band lengths:
246-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development