RnoEX0006472 @ rn6
Exon Skipping
Gene
ENSRNOG00000005334 | Acvr2a
Description
activin A receptor type 2A [Source:RGD Symbol;Acc:70911]
Coordinates
chr3:33026242-33030774:+
Coord C1 exon
chr3:33026242-33026356
Coord A exon
chr3:33028397-33028535
Coord C2 exon
chr3:33030644-33030774
Length
139 bp
Sequences
Splice sites
3' ss Seq
GATTTCAAAATCTTTTTCAGGTT
3' ss Score
8.41
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGACATAAAAAGTAAAAATGTGCTGTTGAAAAACAATCTGACAGCTTGCATTGCTGACTTTGGGTTGGCCTTAAAGTTTGAGGCTGGCAAGTCTGCAGGTGACACCCATGGCCAG
Seq A exon
GTTGGTACCCGGAGGTATATGGCTCCAGAGGTGTTAGAGGGTGCTATAAACTTCCAAAGGGACGCATTTCTGAGGATAGATATGTACGCCATGGGATTAGTCCTGTGGGAACTGGCTTCTCGTTGTACTGCTGCAGATG
Seq C2 exon
GACCTGTAGATGAGTACATGTTGCCATTTGAGGAGGAAATTGGCCAGCATCCATCTCTTGAAGATATGCAGGAAGTTGTTGTGCATAAAAAAAAGAGGCCCGTTTTAAGAGATTATTGGCAGAAACACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005334-'11-16,'11-15,12-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.2=100)
A:
PF0006920=Pkinase=FE(16.0=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATAAAAAGTAAAAATGTGCTGT
R:
TGCGTGTTTCTGCCAATAATCT
Band lengths:
246-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]