GgaEX1006211 @ galGal3
Exon Skipping
Gene
ENSGALG00000012444 | AVR2A_CHICK
Description
NA
Coordinates
chr7:36177346-36180932:+
Coord C1 exon
chr7:36177346-36177460
Coord A exon
chr7:36178718-36178856
Coord C2 exon
chr7:36180802-36180932
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTGTGTCTCTCCAGGTT
3' ss Score
11.56
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGACATCAAAAGCAAGAATGTGCTGCTGAAAAACAACCTTACAGCTTGCATTGCTGATTTTGGTCTAGCTTTAAAGTTTGAGGCTGGAAAATCTGCAGGAGATACACATGGACAG
Seq A exon
GTTGGCACACGAAGGTACATGGCTCCTGAGGTACTAGAAGGTGCTATAAACTTCCAAAGGGATGCGTTTTTGAGAATAGACATGTATGCCATGGGCTTGGTCCTCTGGGAGCTGGCATCGCGCTGCACTGCCTCAGATG
Seq C2 exon
GCCCAGTAGATGAGTACATGTTGCCATTTGAAGAAGAAATTGGCCAGCATCCTTCCCTTGAAGACATGCAGGAAGTTGTGGTTCATAAAAAGAAGAGACCTGTTTTAAGAGAGTGTTGGCAAAAGCATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012444-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.1=100)
A:
PF0006920=Pkinase=FE(15.9=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATCAAAAGCAAGAATGTGC
R:
TGCTTTTGCCAACACTCTCTT
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]