DreEX6019735 @ danRer10
Exon Skipping
Gene
ENSDARG00000104700 | acvr2ab
Description
activin A receptor, type IIAb [Source:ZFIN;Acc:ZDB-GENE-120215-23]
Coordinates
chr6:881266-885370:+
Coord C1 exon
chr6:881266-881380
Coord A exon
chr6:883269-883407
Coord C2 exon
chr6:885240-885370
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGCAGGTT
3' ss Score
10.13
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGACATCAAGAGTAAGAATGTGCTGCTGAAGAGTGATCTAACCGCCTGCATCGCTGACTTTGGCCTGGCGCTCAAGTTTGAAGCAGGAAAATCAACAGGTGACACACACGGACAG
Seq A exon
GTTGGCACGCGGCGCTACATGGCTCCAGAGGTGCTGGAAGGAGCGATCAGTTTCCAGCGGGACGCTTTTCTGAGAATCGACATGTACGCGGCCGGTCTGGTGCTGTGGGAGCTGGCCACACGCTGCACAGCGGCTGACG
Seq C2 exon
GCCCAGTAGATGAGTTCTGTCTGCCGTTTGAGGAGGAGGCTGGTCTTCATCCGTCTCTGGAGGACATGCAGGATGTCGTAGTACACAAGAAACTGCGACCAATATTCAGAGAACACTGGCTCAAACACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104700-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.2=100)
A:
PF0006920=Pkinase=FE(16.0=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAAGAGTAAGAATGTGCTGCT
R:
CGTGTGTTTGAGCCAGTGTTC
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]