BtaEX0002429 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104379592-104382701:+
Coord C1 exon
chr11:104379592-104379731
Coord A exon
chr11:104381981-104382064
Coord C2 exon
chr11:104382577-104382701
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCTGCCCGCCCTTCCACAGGGG
3' ss Score
9.79
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCGCCCCCTTGCCCCTCGCCTCCGGAGACGGGCCGCCGGGCACGTCCTGCACCTGGAGCTGCTGGTGGCCGTGGGTCCTGACGTCCACCGGACCCACGGTGAGGAGACAGAGCGCTACGTGCTCACCAACCTCAACATG
Seq A exon
GGGTCAGAGCTGCTGAGGGACCCATCCCTGGGGGCTCAGTTCCGAGTTCACCTGGTGAAGATGGTCATCCTGACCCAGCCTGAG
Seq C2 exon
GATGCTCCAGAGATCACAGCTAACATCACCGCGTCGCTGCTGAGCGTCTGTGAATGGAGCAGGACAGTGAACCCCGAGGACGACACGGACCCCGGGCATGCTGACCTGGTCCTGTACATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PU(13.5=59.6)
A:
PF0142114=Reprolysin=FE(13.0=100)
C2:
PF0142114=Reprolysin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCACGGTGAGGAGACAG
R:
TGTACAGGACCAGGTCAGCAT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development