GgaEX1006350 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6909086-6909930:+
Coord C1 exon
chr17:6909086-6909225
Coord A exon
chr17:6909637-6909720
Coord C2 exon
chr17:6909806-6909930
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCTATCACTTGACAGGGG
3' ss Score
8.39
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CAGGGCACTTTGCTCCTCGCCTACAAAAGAGGGCTGATGGAGCTGTCAAACATCTGGAGCTGATGGTTGTAGCAGGTCCTGATGTTTACATGTACCACCAGGAGGACACGGAGCGATATATTCTTACCAACCTGAACATT
Seq A exon
GGGGCAGAACTGCTGCGAGATGCCTCACTGGGTGCTCATTTCAGGGTTCATTTGATGCAAATGCTTGTTTTGAGGGAGCCAGAG
Seq C2 exon
GTGAATGTGAACATCACAACAAATATCACCTCCTCGCTGATCAGTGTTTGTGAGTGGAGCAAGAAGGTCAACCCCCAGAATGACTCTGATCCCCAGCATGCTGACATCGTCCTGTATGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PU(14.6=63.8)
A:
PF0142114=Reprolysin=FE(13.1=100)
C2:
PF0142114=Reprolysin=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCCTACAAAAGAGGGCTG
R:
AACACTGATCAGCGAGGAGGT
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]