HsaEX0002425 @ hg38
Exon Skipping
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133424321-133426062:+
Coord C1 exon
chr9:133424321-133424478
Coord A exon
chr9:133425529-133425612
Coord C2 exon
chr9:133425938-133426062
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTCATCTGCCCTTGCACAGGGG
3' ss Score
8.33
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCCGCCCTCCTTCCCCTGGCTTCCAGAGGCAGAGGCAGAGGCAGAGGCGGGCTGCAGGCGGCATCCTACACCTGGAGCTGCTGGTGGCCGTGGGCCCCGATGTCTTCCAGGCTCACCAGGAGGACACAGAGCGCTATGTGCTCACCAACCTCAACATC
Seq A exon
GGGGCAGAACTGCTTCGGGACCCGTCCCTGGGGGCTCAGTTTCGGGTGCACCTGGTGAAGATGGTCATTCTGACAGAGCCTGAG
Seq C2 exon
GGTGCTCCAAATATCACAGCCAACCTCACCTCGTCCCTGCTGAGCGTCTGTGGGTGGAGCCAGACCATCAACCCTGAGGACGACACGGATCCTGGCCATGCTGACCTGGTCCTCTATATCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PU(14.1=54.7)
A:
PF135821=Reprolysin_3=PU(20.7=89.3)
C2:
PF135821=Reprolysin_3=FE(33.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTACACCTGGAGCTGCTG
R:
TCCTCAGGGTTGATGGTCTGG
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development