DreEX6051428 @ danRer10
Exon Skipping
Gene
ENSDARG00000076270 | adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:ZFIN;Acc:ZDB-GENE-070814-7]
Coordinates
chr8:45264787-45266469:-
Coord C1 exon
chr8:45266336-45266469
Coord A exon
chr8:45264988-45265071
Coord C2 exon
chr8:45264787-45264911
Length
84 bp
Sequences
Splice sites
3' ss Seq
TATCTACTGTACACTTGCAGGCC
3' ss Score
8.05
5' ss Seq
GAGGTATAA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GTCAGTTCAGGTTACGGAGGTCACCTCTGAGGTCAGAGGTCACATATCTGGAGCTAGCAGTGGTTGTTGGTCCTGATGTCTACGAAGTTCATCGGCAAGACACTGAGAGATACATCTTAACCAACCTCAACATT
Seq A exon
GCCTCTGAGCTTTTGAGAGATGTTACCCTCGGTGCCAATATAAGGGTTCACCTTGTCCGTATGATCATTCTTACAGAGCCAGAG
Seq C2 exon
CCAGACATCCAGATCTCAGAAAACATCACATCATCTTTAAAAAGTGTTTGCGAATGGGGTCAGAAGGTCAATCCTGATGCTGACAGTGATCCTTTACATGCAGATCTACTGTTATATATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076270-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PU(14.6=65.2)
A:
PF0142114=Reprolysin=FE(13.6=100)
C2:
PF0142114=Reprolysin=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGCTAGCAGTGGTTGT
R:
AGGATCACTGTCAGCATCAGGA
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]