RnoEX0006791 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5522128-5525974:+
Coord C1 exon
chr3:5522128-5522276
Coord A exon
chr3:5525538-5525621
Coord C2 exon
chr3:5525850-5525974
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCCCCGTTGCCCTCTTCAGGGG
3' ss Score
9.61
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GCCATCCTTCCTCTCACCTCCAGAGACTGAGACAGAGGAGGACTTCGGAGGACATTCTGCACCTAGAACTCCTGGTAGCTGTGGGCCCCGATGTTTACCAGGCTCACCAGGAGGACACAGAGCGCTACGTGCTCACCAACCTCAATATC
Seq A exon
GGGTCAGAACTGTTGAGAAACCCGTCCCTAGGGGCTCAGCTCCAAGTGCACCTGGTGAAGCTGATCATTCTCTCGGACTCAGAG
Seq C2 exon
AATACTCCGAATATCACGACCAACATCACCTCATCCTTGATGAGTGTCTGCGAGTGGAGCCAGACGATCAATCCCCATGATGACAGGGACCCAAGTCATGCTGACCTGATCATCTATATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780-'3-3,'3-2,5-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.151
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PU(13.9=58.0)
A:
PF135821=Reprolysin_3=FE(21.8=100)
C2:
PF135821=Reprolysin_3=FE(33.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATGTTTACCAGGCTCACC
R:
CAGGTCAGCATGACTTGGGTC
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]