BtaEX0003407 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13430493-13433701:-
Coord C1 exon
chr6:13433477-13433701
Coord A exon
chr6:13431647-13431745
Coord C2 exon
chr6:13430493-13430647
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTTGGATGTACTCAGTAA
3' ss Score
2.33
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
TTTCCTGGTTAGTTTTATGGTGGATGCCCGAGGTGGTGCTATGCGAGGATGCAGACACAACGGGCTCCGCATCATTATTCCGCCCCGGAAATGTACCGCCCCAACACGAGTCACCTGCCGACTGGTCAAACGCCATAGACTGGCGACAATGCCTCCAATGGTGGAAGGAGAGGGCCTGGCCAGTCGCCTGATTGAAGTTGGACCTTCTGGTGCTCAGTTCCTTGG
Seq A exon
TAAACTTCACCTGCCAACGGCTCCTCCCCCACTTAATGAGGGAGAAAGTTTGGTCAGCCGCATCCTTCAGCTGGGGCCTCCTGGAACCAAATTCCTTGG
Seq C2 exon
GCCTGTGATCGTGGAGATCCCTCATTTCGCTGCCCTGCGAGGAAAAGAGAGGGAACTGGTGGTCCTGCGCAGTGAGAACGGGGACAGCTGGAAAGAGCATTACTGTGAATACACGGAGGAGGAGCTGAATGAAATCCTGAACGGCATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.118 C2=0.024
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
A:
PF0079115=ZU5=PD(8.3=20.6),PF0079115=ZU5=PU(53.2=97.1)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Inclusion Isoform:
ENSBTAT00000063504fB552
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTCGCCTGATTGAAGTT
R:
TTCATTCAGCTCCTCCTCCGT
Band lengths:
180-279
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
Inclusion enhances interaction with EPB4L2, DCTN4, SCN1B, SLC8A1, DNAJB1, CDH1, ATP1A1, SPNA2. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development