GgaEX0018077 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58328276-58331633:-
Coord C1 exon
chr4:58331409-58331633
Coord A exon
chr4:58329616-58329714
Coord C2 exon
chr4:58328276-58328430
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTTGGATGTACTCAGTAA
3' ss Score
2.33
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
CTTCCTAGTTAGTTTCATGGTGGATGCTCGTGGGGGTGCCATGAGAGGCTGCAGACATAACGGACTGCGGATTATTATTCCTCCACGGAAATGCACTGCTCCAACACGAGTGACTTGCCGCTTGGTGAAACGTCACAGACTGGCCACCATGCCTCCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGTCTGATCGAAGTGGGACCATCTGGGGCCCAGTTTCTTGG
Seq A exon
TAAACTTCATCTGCCTACGGCTCCTCCCCCACTTAATGAGGGAGAAAGCTTGGTCAGCCGAATCCTTCAGCTGGGGCCTCCTGGGACCAAATTCCTTGG
Seq C2 exon
GCCTGTGATTGTGGAGATTCCCCATTTTGCTGCTCTGCGTGGGAAAGAGAGAGAACTGGTGATCCTGCGCAGTGAGAACGGGGACAGCTGGAAGGAACATTTCTGCGAATACACTGAGGATGAACTAAATGAAATCTTGAATGGGATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=0.088 C2=0.021
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
A:
PF0079115=ZU5=PD(8.3=20.6),PF0079115=ZU5=PU(53.2=97.1)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCAACACGAGTGACTTG
R:
TCTCTCTCTTTCCCACGCAGA
Band lengths:
183-282
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
Inclusion enhances interaction with EPB4L2, DCTN4, SCN1B, SLC8A1, DNAJB1, CDH1, ATP1A1, SPNA2. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]