RnoEX0009352 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231267058-231269952:-
Coord C1 exon
chr2:231269728-231269952
Coord A exon
chr2:231268190-231268288
Coord C2 exon
chr2:231267058-231267212
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTCGGATGTACTCAGTAA
3' ss Score
1.49
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
TTTCCTAGTCAGTTTTATGGTGGATGCCCGTGGTGGTGCCATGCGAGGGTGCAGACACAATGGGCTCAGAATCATTATCCCACCTCGGAAATGCACAGCCCCGACTCGAGTCACCTGCCGCCTTGTGAAACGCCACAGACTGGCGACGATGCCACCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGCCTGATTGAAGTCGGACCTTCCGGAGCTCAGTTCCTTGG
Seq A exon
TAAACTTCACCTGCCAACGGCTCCTCCCCCACTTAATGAGGGAGAAAGTTTGGTCAGCCGCATCCTTCAGCTGGGGCCTCCTGGAACCAAATTCCTTGG
Seq C2 exon
GCCCGTGATTGTGGAGATCCCTCACTTCGCCGCTCTTCGAGGAAAGGAGAGGGAGCTGGTGGTCCTGCGCAGTGAAAATGGAGACAGCTGGAAAGAGCATTTCTGTGAATACACTGAAGATGAGCTGAACGAAATCCTTAATGGCATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.171 C2=0.019
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
A:
PF0079115=ZU5=PD(8.3=20.6),PF0079115=ZU5=PU(53.2=97.1)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCATGGTGGAAGGAGAAGG
R:
TGCTCTTTCCAGCTGTCTCCA
Band lengths:
171-270
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
Inclusion enhances interaction with EPB4L2, DCTN4, SCN1B, SLC8A1, DNAJB1, CDH1, ATP1A1, SPNA2. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]