BtaEX0003965 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001915 | APOH
Description
Bos taurus apolipoprotein H (beta-2-glycoprotein I) (APOH), mRNA. [Source:RefSeq mRNA;Acc:NM_173992]
Coordinates
chr19:63238342-63242356:-
Coord C1 exon
chr19:63242180-63242356
Coord A exon
chr19:63239542-63239618
Coord C2 exon
chr19:63238342-63238530
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTTCAATTTTCCCTCCGCAGGTT
3' ss Score
10.62
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCTGCCCCAAGCCAGATGAGCTACCGTTTTCCACGGTGGTTCCACTGAAACGGACCTATGAGCCCGGGGAGCAGATAGTCTTCTCCTGCCAGCCGGGCTACGTGTCCCGGGGAGGGATCCGGCGGTTTACATGCCCGCTCACAGGACTCTGGCCCATCAACACGCTGAAATGCATGC
Seq A exon
GTTTTATCTGAAAGGAGCTAGTTCTGCAAAATGCACTGAGGAAGGGAAGTGGAGCCCAGACCTTCCTGTCTGTGCCC
Seq C2 exon
CTATAACCTGCCCTCCACCACCCATACCCAAGTTTGCAAGTCTCAGCGTTTACAAGCCGTTGGCTGGGAACAACTCCTTCTATGGCAGCAAGGCAGTCTTTAAGTGCTTGCCACACCACGCGATGTTTGGAAATGACACCGTTACCTGCACGGAACATGGGAACTGGACGCAGTTGCCAGAATGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001915_MULTIEX1-2/4=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(93.5=96.7),PF0008415=Sushi=PU(3.4=3.3)
A:
PF0008415=Sushi=PD(40.7=88.9)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCACGGTGGTTCCACTG
R:
GGTGGTGGAGGGCAGGTTATA
Band lengths:
173-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development