HsaEX6024296 @ hg19
Exon Skipping
Gene
ENSG00000091583 | APOH
Description
apolipoprotein H (beta-2-glycoprotein I) [Source:HGNC Symbol;Acc:616]
Coordinates
chr17:64216672-64222242:-
Coord C1 exon
chr17:64222146-64222242
Coord A exon
chr17:64219816-64219892
Coord C2 exon
chr17:64216672-64216860
Length
77 bp
Sequences
Splice sites
3' ss Seq
AATGAATTTTCCTTTTGCAGGTT
3' ss Score
10.19
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
CCAGAGTATGTCCTTTTGCTGGAATCTTAGAAAATGGAGCCGTACGCTATACGACTTTTGAATATCCCAACACGATCAGTTTTTCTTGTAACACTGG
Seq A exon
GTTTTATCTGAATGGCGCTGATTCTGCCAAGTGCACTGAGGAAGGAAAATGGAGCCCGGAGCTTCCTGTCTGTGCTC
Seq C2 exon
CCATCATCTGCCCTCCACCATCCATACCTACGTTTGCAACACTTCGTGTTTATAAGCCATCAGCTGGAAACAATTCCCTCTATCGGGACACAGCAGTTTTTGAATGTTTGCCACAACATGCGATGTTTGGAAATGATACAATTACCTGCACGACACATGGAAATTGGACTAAATTACCAGAATGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091583-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=FE(53.3=100)
A:
PF0008415=Sushi=PD(40.0=88.9)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGAAAATGGAGCCGTACGC
R:
ACTGCTGTGTCCCGATAGAGG
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)