MmuEX6090714 @ mm10
Exon Skipping
Gene
ENSMUSG00000000049 | Apoh
Description
apolipoprotein H [Source:MGI Symbol;Acc:MGI:88058]
Coordinates
chr11:108397299-108407339:+
Coord C1 exon
chr11:108397299-108397395
Coord A exon
chr11:108404811-108404887
Coord C2 exon
chr11:108407291-108407339
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATTACATTTTTCTTTTCCAGGTT
3' ss Score
11.97
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCAGAGTATGTCCTTTCGCTGGAATCTTAGAAAATGGAATTGTACGCTACACGAGTTTTGAATATCCCAAGAACATCAGTTTTGCTTGTAACCCTGG
Seq A exon
GTTTTTTCTGAATGGGACCAGCTCATCTAAGTGCACGGAGGAAGGAAAATGGAGCCCAGATATTCCTGCTTGTGCTC
Seq C2 exon
GCATCACCTGCCCGCCACCACCAGTTCCAAAGTTTGCACTCCTTAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000049-'11-24,'11-15,19-24=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(4.8=9.1),PF0008415=Sushi=FE(53.3=100)
A:
PF0008415=Sushi=PD(40.7=88.9)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTATGTCCTTTCGCTGG
R:
TCCTTAAGGAGTGCAAACTTTGGA
Band lengths:
146-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types