RnoEX0010522 @ rn6
Exon Skipping
Gene
ENSRNOG00000003566 | Apoh
Description
apolipoprotein H [Source:RGD Symbol;Acc:1310625]
Coordinates
chr10:96642054-96647699:+
Coord C1 exon
chr10:96642054-96642150
Coord A exon
chr10:96644248-96644324
Coord C2 exon
chr10:96647511-96647699
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATTACATTTTCCTTTTCCAGGTA
3' ss Score
11.99
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCAGAGTGTGTCCTTTTGCCGGAATCTTAGAAAATGGAGTTGTACGCTACACGACTTTTGAATATCCCAACACCATTGGCTTTGCTTGTAACCCTGG
Seq A exon
GTATTATCTGAACGGGACTAGCTCTTCTAAGTGCACGGAGGAAGGAAAATGGAGTCCAGAACTTCCTGTTTGTGCTC
Seq C2 exon
GGATCACCTGCCCGCCACCACCAATTCCTAAGTTTGCAGCCCTTAAGGAATACAAGACTTCAGTTGGGAACAGCTCTTTTTATCAGGACACAGTGGTCTTTAAATGCTTGCCACACTTTGCCATGTTTGGAAATGACACAGTTACGTGCACAGCCCATGGAAACTGGACCCAATTGCCAGAATGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003566-'4-7,'4-5,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(4.8=9.1),PF0008415=Sushi=FE(53.3=100)
A:
PF0008415=Sushi=PD(40.0=88.9)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTTGCTTGTAACCCTGG
R:
GCTGTGCACGTAACTGTGTCA
Band lengths:
175-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]