HsaEX6024296 @ hg38
Exon Skipping
Gene
ENSG00000091583 | APOH
Description
apolipoprotein H [Source:HGNC Symbol;Acc:HGNC:616]
Coordinates
chr17:66220554-66226124:-
Coord C1 exon
chr17:66226028-66226124
Coord A exon
chr17:66223698-66223774
Coord C2 exon
chr17:66220554-66220742
Length
77 bp
Sequences
Splice sites
3' ss Seq
AATGAATTTTCCTTTTGCAGGTT
3' ss Score
10.19
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
CCAGAGTATGTCCTTTTGCTGGAATCTTAGAAAATGGAGCCGTACGCTATACGACTTTTGAATATCCCAACACGATCAGTTTTTCTTGTAACACTGG
Seq A exon
GTTTTATCTGAATGGCGCTGATTCTGCCAAGTGCACTGAGGAAGGAAAATGGAGCCCGGAGCTTCCTGTCTGTGCTC
Seq C2 exon
CCATCATCTGCCCTCCACCATCCATACCTACGTTTGCAACACTTCGTGTTTATAAGCCATCAGCTGGAAACAATTCCCTCTATCGGGACACAGCAGTTTTTGAATGTTTGCCACAACATGCGATGTTTGGAAATGATACAATTACCTGCACGACACATGGAAATTGGACTAAATTACCAGAATGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091583-'9-30,'9-27,10-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=FE(53.3=100)
A:
PF0008415=Sushi=PD(40.0=88.9)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGAAAATGGAGCCGTACGC
R:
ACTGCTGTGTCCCGATAGAGG
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains