BtaEX0004678 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21775126-21790185:+
Coord C1 exon
chr2:21775126-21775195
Coord A exon
chr2:21787236-21787332
Coord C2 exon
chr2:21790067-21790185
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTAAAACTTTTTGCCACAGCGT
3' ss Score
7.16
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GCAATACAAGGACCTGTGGAATATGAGTGATGACAAACCGTTTCTATGTACTGCCCCTGGATGTGGCCAG
Seq A exon
CGTTTTACCAACGAGGATCATTTGGCTGTCCATAAACATAAACATGAGATGACACTGAAATTTGGTCCAGCACGTAATGACAGTGTCATTGTGGCTG
Seq C2 exon
ATCAGACCCCAACACCAACAAGATTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCAAGTCCATTTGAGAATGAGTTCAAGAAAGCCTCAGAAGATGACATTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295_MULTIEX3-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.727 C2=0.325
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PU(34.6=37.5)
A:
PF138941=zf-C2H2_4=PD(57.7=45.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATACAAGGACCTGTGGAA
R:
TGTCATCTTCTGAGGCTTTCTTGA
Band lengths:
181-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development