GgaEX0013638 @ galGal3
Exon Skipping
Gene
ENSGALG00000009287 | ATF2_CHICK
Description
NA
Coordinates
chr7:17797977-17803341:+
Coord C1 exon
chr7:17797977-17798046
Coord A exon
chr7:17800628-17800724
Coord C2 exon
chr7:17803223-17803341
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTAAAACTTTCTGCCACAGCGT
3' ss Score
6.6
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTAGCACGACGACCTGTGGAATATGAGTGATGACAAACCCTTTTTATGCACTGCCCCTGGATGTGGCCAG
Seq A exon
CGTTTTACCAATGAGGATCATTTGGCTGTCCATAAACATAAACATGAGATGACACTGAAATTTGGTCCGGCTCGTAATGATAGTGTCATTGTGGCTG
Seq C2 exon
ATCAGACACCAACACCAACTCGATTCTTGAAGAACTGTGAAGAAGTGGGCTTATTCAATGAATTAGCAAGTCCTTTTGAAAATGAGTTTAAAAAGGCTTCTGAAGATGATATTAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.636 C2=0.344
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PU(34.6=56.2)
A:
PF138941=zf-C2H2_4=PD(57.7=45.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACGACGACCTGTGGAATA
R:
CATCTTCAGAAGCCTTTTTAAACTCA
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]