HsaEX0006495 @ hg19
Exon Skipping
Gene
ENSG00000115966 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:784]
Coordinates
chr2:175982979-175994935:-
Coord C1 exon
chr2:175994866-175994935
Coord A exon
chr2:175986172-175986268
Coord C2 exon
chr2:175982979-175983097
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTAAAACTTTTTGCCACAGCGT
3' ss Score
7.16
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GCAATACAAGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGTACTGCGCCTGGATGTGGCCAG
Seq A exon
CGTTTTACCAACGAGGATCATTTGGCTGTCCATAAACATAAACATGAGATGACACTGAAATTTGGTCCAGCACGTAATGACAGTGTCATTGTGGCTG
Seq C2 exon
ATCAGACCCCAACACCAACAAGATTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCGAGTCCATTTGAGAATGAATTCAAGAAAGCTTCAGAAGATGACATTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115966_MULTIEX1-1/11=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.024 A=0.739 C2=0.360
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PU(34.6=37.5)
A:
PF138941=zf-C2H2_4=PD(57.7=45.5)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATACAAGGACCTGTGGAA
R:
TGTCATCTTCTGAAGCTTTCTTGA
Band lengths:
181-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)