RnoEX0012528 @ rn6
Exon Skipping
Gene
ENSRNOG00000001597 | Atf2
Description
activating transcription factor 2 [Source:RGD Symbol;Acc:621862]
Coordinates
chr3:60753019-60765642:-
Coord C1 exon
chr3:60765573-60765642
Coord A exon
chr3:60755942-60756038
Coord C2 exon
chr3:60753019-60753137
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTAAAACTTTTTGCCACAGCGT
3' ss Score
7.16
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
ATAAAACAAGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGCACTGCCCCTGGGTGTGGCCAG
Seq A exon
CGTTTTACCAACGAGGATCATTTGGCTGTCCATAAACATAAACATGAGATGACACTGAAATTTGGTCCAGCACGTAATGACAGTGTCATTGTGGCTG
Seq C2 exon
ATCAGACTCCAACGCCAACAAGGTTCCTAAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCAAGTCCATTCGAGAATGAATTCAAGAAGGCTTCAGAAGATGACATTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001597_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.818 C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGACCTGTGGAATATGAGTG
R:
TGTCATCTTCTGAAGCCTTCTTGA
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]