GgaEX0013638 @ galGal4
Exon Skipping
Gene
ENSGALG00000009287 | ATF2
Description
Cyclic AMP-dependent transcription factor ATF-2 [Source:UniProtKB/Swiss-Prot;Acc:O93602]
Coordinates
chr7:16166515-16171879:+
Coord C1 exon
chr7:16166515-16166584
Coord A exon
chr7:16169166-16169262
Coord C2 exon
chr7:16171761-16171879
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTAAAACTTTCTGCCACAGCGT
3' ss Score
6.6
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTAGCACGACGACCTGTGGAATATGAGTGATGACAAACCCTTTTTATGCACTGCCCCTGGATGTGGCCAG
Seq A exon
CGTTTTACCAATGAGGATCATTTGGCTGTCCATAAACATAAACATGAGATGACACTGAAATTTGGTCCGGCTCGTAATGATAGTGTCATTGTGGCTG
Seq C2 exon
ATCAGACACCAACACCAACTCGATTCTTGAAGAACTGTGAAGAAGTGGGCTTATTCAATGAATTAGCAAGTCCTTTTGAAAATGAGTTTAAAAAGGCTTCTGAAGATGATATTAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.848 C2=0.461
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PU(34.6=56.2)
A:
PF138941=zf-C2H2_4=PD(57.7=45.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACGACGACCTGTGGAATA
R:
CATCTTCAGAAGCCTTTTTAAACTCA
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]