BtaEX0004979 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007272 | ATP6V0A2
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a2 (ATP6V0A2), mRNA. [Source:RefSeq mRNA;Acc:NM_176637]
Coordinates
chr17:54201717-54206442:-
Coord C1 exon
chr17:54206325-54206442
Coord A exon
chr17:54204130-54204301
Coord C2 exon
chr17:54201717-54203519
Length
172 bp
Sequences
Splice sites
3' ss Seq
GCAAAATGCTTCCCACGCAGAGT
3' ss Score
4.77
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
TTTGATTTTGGAGAAATATTAATGACCCAAATAATTCATTCCATCGAGTACTGTCTGGGATGCATCTCTAACACTGCTTCGTACCTGAGGCTCTGGGCACTCAGTTTGGCTCACGCAC
Seq A exon
AGTTGTCTGAGGTCCTGTGGGCCATGCTGATGCACGTCGGCCTCCGGGTAGACACAGCCTACGGGGTCTTGGTGCTGCTCCCAGTGATCGCTTTCTTTGCAGTATTGACGATTTTCATCCTTTTGATCATGGAAGGGCTTTCTGCATTTCTTCACGCCATCCGCCTCCACTG
Seq C2 exon
GGTAGAATTTCAGAACAAATTCTACGTTGGTGCAGGCACCAAATTTGTTCCTTTTTCATTCAGATTACTTTCTTCGAAGTTCAGTGATGACCTGGCGTGATCATATTGAAGTATCCAACAAGCTTTCAGATTTATGGAGAATTATCATGTTGTAGAATTCCTTATGTTAAATTGATAGGAAAAATTCCAACTTCATTAATTGCCTTATGAGACAGCCAAATCTGTAAGATATACCTCTTCCTCATATGTTAAGTATTTTGTAAACTTTCTCAATTTCAGATATATAAATTTCTTTCCATTTTTATGATGAGCAAATGTAAGTTCATGCAAAAGTTATGGTTGTTTTTAAAAATACAGGCGTGGGAGAGAGAAGCCAATTTTGAATGGTGAATTGAACATAGTCTTAGATATTTGATTCCTTTTCATTTTATTAAAAAAAAAAAATCCAGAGTTATTCTGTCACCTGAAGTTGTCAGATAATATTTTCCAACAGCTGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007272_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(7.0=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=61.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAGTTTGGCTCACGCA
R:
AGATTTGGCTGTCTCATAAGGCA
Band lengths:
244-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development