MmuEX6021021 @ mm10
Exon Skipping
Gene
ENSMUSG00000038023 | Atp6v0a2
Description
ATPase, H+ transporting, lysosomal V0 subunit A2 [Source:MGI Symbol;Acc:MGI:104855]
Coordinates
chr5:124719049-124724455:+
Coord C1 exon
chr5:124719049-124719166
Coord A exon
chr5:124719851-124720022
Coord C2 exon
chr5:124721698-124724455
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCAAACGGCTTTCTTTGCAGAGC
3' ss Score
8.42
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTTAACTTCGGGGAGATCCTGATGACGCAGGCCATCCACTCCATTGAGTACTGCCTCGGCTGCATCTCCAACACCGCCTCCTACCTGAGGCTCTGGGCACTCAGCCTGGCCCATGCAC
Seq A exon
AGCTCTCTGATGTGCTGTGGGCCATGCTGATGCGCGTGGGGCTGCGTGTGGACACCACCTATGGGGTCTTGCTGCTGCTGCCTGTCATGGCTTTCTTTGCAGTTTTGACCATTTTTATCCTTCTGGTCATGGAGGGTCTTTCTGCATTCCTCCACGCCATAAGGCTTCACTG
Seq C2 exon
GGTAGAATTTCAGAACAAATTCTACGTTGGTGCAGGCACCAAGTTTGTTCCCTTCTCCTTCAGTCTGCTCTCCTCCAAGTTCAGTAATGATGACAGCATAGCATGATTGCACGCTGCAGCAAGCCCGCTCTGATCAACGGAGGACTATCATGTTACAGAATTCACTCACTCACTCCGGTCAGAACTTACCAGGGGAAAGTTCCACCCTCGTTGATTGCCTTACGATTCAGCCAAATGGTTCTGTAAGATACACCTCTTCCTCATGGTGAAGATTTTGTAAAACTCACCACTCCGGACACAGAAATTTCGTTGGTTTTTATTATGAGCAAATATAAGTTAATGCCAACGCTACTTTAAAGTTATTTTTTAAAGTGTAAGATTGGAGGAGAGAAGCCAGCTGAACAGCTAGCTAAAAATGGTCTTAGATACTTGATTCCTTTTCAACTTAAAAAAAAAGAAACATGAAGTTATTCCATCGCAAGAAGATGTCAGATAATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038023-'41-47,'41-45,43-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(7.0=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGAGTACTGCCTCGGCTG
R:
TGACCGGAGTGAGTGAGTGAA
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types