DreEX0015964 @ danRer10
Exon Skipping
Gene
ENSDARG00000035565 | atp6v0a2b
Description
ATPase, H+ transporting, lysosomal V0 subunit a2b [Source:ZFIN;Acc:ZDB-GENE-060526-4]
Coordinates
chr5:24057258-24064069:+
Coord C1 exon
chr5:24057258-24057375
Coord A exon
chr5:24059911-24060082
Coord C2 exon
chr5:24062986-24064069
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCTCATGATCCAGAGT
3' ss Score
7.32
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
CCTGATTTTCCGGATCTGTTTCTTAATCAGTCCATTCACACGATTGAGTATTGCCTTGGCTGCATCTCTAATACTGCGTCTTACCTCCGCCTGTGGGCTCTCAGCCTGGCACATGCCC
Seq A exon
AGTTGTCTGAAGTGTTGTGGGAGATGGTGATGCGGGTGGCTCTGCATGTGGACACCAGTGTGGGCATTGTGTTGCTGGTGCCTGTTTTTGGCCTGTTTGCGGTCCTCACGGTGTCCATCCTGCTGGTGATGGAGGGACTTTCAGCTTTTCTTCACGCTCTCAGACTCCACTG
Seq C2 exon
GGTGGAGTTTCAGAATAAGTTCTACAGCGGCGTCGGAGTCAAGTTCATACCGTTTGCCTTCTCTCTCATGCACAGCAGTTTTGAAAAAGATGGGCTGTTGTGAACGGTCAGATGCTGAAGGTCAGATGTGGAATTTTGATGTATAACATGCCAAATTGGTCCAACCAAATACTTTTGTGGGATGGATTGTATGAAGATCTCGCATCACACAAAGACTGTAAACGGGACTCTTGAGTGCTTCAGATCTGTTGAATGTATTCTGTCAGCTCTTCACTAAAGTGATGCTGGGAAATTTCAGTTTTCCACCTTGTTGCCTGTTGGCTATGATTCTCCATAGCTGAGCACATTCCACAAGTGACTTCAAGATTTCACTTGTACATTTGCTGTAAAGCAAGTGAAGGTTTAATAGTTTATTTTGAATAGTCCAGATTTTTCATCCTGTTGTTTTCACTTCCGTGGTGTTGGTTGATTGTGTTCGTTCATAACGCTGAATGACATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035565-'18-25,'18-24,20-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(7.0=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGTATTGCCTTGGCTGCA
R:
GGTTGGACCAATTTGGCATGT
Band lengths:
242-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]