RnoEX0013276 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37368623-37370984:-
Coord C1 exon
chr12:37370867-37370984
Coord A exon
chr12:37369931-37370102
Coord C2 exon
chr12:37368623-37368697
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTGCACGGCTTTCTTTGCAGAGC
3' ss Score
8.95
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTTAACTTCGGGGAGATCCTGATGACTCAGGCCATCCACTCCATCGAGTACTGCCTTGGCTGCATCTCCAACACTGCGTCCTACCTGAGGCTTTGGGCTCTCAGCCTGGCACACGCAC
Seq A exon
AGCTCTCGGATGTGCTGTGGGCCATGCTGATGCGTGTAGGCCTGCGTGTGGACAACACTTACGGGGTCCTGCTGCTGCTGCCCGTCATGACTTTCTTTGCAGTTCTGACCGTTTTTATCCTTCTGGTCATGGAAGGGCTTTCTGCATTTCTCCACGCCATCCGGCTTCACTG
Seq C2 exon
AGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTCATGGGACCTGATGCTCTCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'54-51,'54-50,55-51
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=PD(13.1=96.6)
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000087698fB1741
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGGAGATCCTGATGACTC
R:
CAGAAGAGAGCATCAGGTCCC
Band lengths:
186-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]