GgaEX1010037 @ galGal4
Exon Skipping
Gene
ENSGALG00000003194 | ATP6V0A2
Description
V-type proton ATPase 116 kDa subunit a isoform 2 [Source:RefSeq peptide;Acc:NP_990054]
Coordinates
chr15:4909039-4910817:-
Coord C1 exon
chr15:4910700-4910817
Coord A exon
chr15:4909965-4910136
Coord C2 exon
chr15:4909039-4909141
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTTTTCAATAGAGT
3' ss Score
9.45
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
TTTAATTTTGCAGATGCTTTTATGAATCAAGCCATTCATACCATTGAGTACTGTCTAGGATGTATTTCTAATACAGCATCGTATCTGAGACTCTGGGCATTAAGTCTTGCGCATGCAC
Seq A exon
AGTTATCAGAAGTTCTGTGGCAAATGGTGATGAGAGTGGGCCTTCGTGTGGACACAACCTATGGTGTCTTACTGCTAGTCCCTGTTCTAGCCTTTTTTGCTGCGCTGACAGTTTTTATTCTTTTGGTCATGGAGGGGCTTTCTGCTTTTCTCCATGCTATACGACTTCACTG
Seq C2 exon
GGTGGAATTTCAGTACAAATTCTATACCGGTGGAGGATACAAGTTTACGCCTTTCTCTTTTCAGCACATTTCTTTACATTTTAATAAAGATGATATAGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194-'28-33,'28-29,29-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
PF0149614=V_ATPase_I=FE(7.1=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTTGCAGATGCTTTTATGAATCA
R:
ATGTAAAGAAATGTGCTGAAAAGAGA
Band lengths:
194-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]