BtaEX0005027 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:62945947-62989576:-
Coord C1 exon
chr6:62989512-62989576
Coord A exon
chr6:62970120-62970292
Coord C2 exon
chr6:62945947-62946130
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTTTAATTTTACAGGGA
3' ss Score
9.52
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGCACTCCTGCAAACTTCTGAGGAAGAACATGGGAATGATTGTTATAAATGAAGGCTCTCTTGAT
Seq A exon
GGAACACGGGAAACTCTCAGTCGTCACTGCACTACTCTGGGTGATGCTCTTCGGAAGGAGAATGACTTTGCTCTTATAATTGATGGGAAAACCCTCAAATATGCCTTAACTTTTGGAGTGAGGCAGTATTTCCTGGACTTAGCTTTGTCGTGCAAAGCTGTTATTTGCTGCAG
Seq C2 exon
GGTTTCTCCTCTTCAAAAATCTGAAGTTGTGGAGATGGTTAAGAAACAAGTTAAAGTCATAACACTCGCCATTGGTGATGGAGCAAATGACGTCAGTATGATACAGACGGCACATGTTGGAGTAGGAATAAGTGGCAATGAAGGCCTTCAGGCAGCTAATTCTTCTGACTACTCTATAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156-'29-38,'29-35,32-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(5.4=100)
A:
PF127102=HAD=FE(14.6=100)
C2:
PF127102=HAD=PD(9.0=56.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTCCTGCAAACTTCTGA
R:
ATAGAGTAGTCAGAAGAATTAGCTGC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development