GgaEX0020987 @ galGal4
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:67810745-67819670:+
Coord C1 exon
chr4:67810745-67810809
Coord A exon
chr4:67814546-67814718
Coord C2 exon
chr4:67819487-67819670
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACGCTTTCTTTGTGCAACAGGGA
3' ss Score
7.38
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCACTCCTGTAAACTTCTGAGAAAGAATATGGGACTGATTGTTATAAATGAAGGCTCTCTTGAT
Seq A exon
GGAACGAGGGAGACACTTAGCCATCATTGCAGTACTCTTGGTGATGCTTTAAGGAAGGAAAATGATTTTGCTCTCATTATTGACGGTAAATCTCTGAAGTATGCTTTGACTTTTGGAGTGAGGCAATATTTCCTGGATTTGGCTTTGTCATGTAAAGCTGTTATTTGTTGCAG
Seq C2 exon
GGTATCTCCACTTCAAAAATCTGAAGTTGTAGAAATGGTCAAAAAGCAAGTTAAAGTAGTAACTCTAGCAATTGGTGATGGAGCAAATGATGTTAGTATGATACAAACAGCACATGTTGGTGTTGGTATTAGTGGAAATGAAGGTCTACAGGCTGCTAATTCTTCAGACTACTCAATAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(5.2=100)
A:
PF127102=HAD=FE(14.1=100)
C2:
PF127102=HAD=PD(8.6=56.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTCCTGTAAACTTCTGAGA
R:
CTGAGCTATTGAGTAGTCTGAAGA
Band lengths:
249-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]