MmuEX6017970 @ mm10
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:67667524-67703044:-
Coord C1 exon
chr5:67702980-67703044
Coord A exon
chr5:67682758-67682930
Coord C2 exon
chr5:67667524-67667707
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACCGTTGGTTTGTATTCCAGGGC
3' ss Score
9.58
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GACACTCCTGTAGACTCCTCAAGAGGAACATGGGAATGATCGTGATAAACGAGGGCTCTCTTGAC
Seq A exon
GGCACGAGGGAAACTCTCAGCCGCCACTGCACCACCCTGGGAGATGCTCTTCGGAAGGAAAATGATTTTGCTCTTATAATTGATGGGAAGACCCTCAAATATGCCTTAACCTTTGGCGTCCGGCAGTATTTCCTGGACTTAGCTCTGTCCTGCAAAGCTGTCATTTGCTGCAG
Seq C2 exon
GGTTTCTCCTCTTCAGAAGTCCGAGGTTGTCGAGATGGTTAAGAAACAAGTCAAAGTCATCACACTTGCCATCGGGGATGGAGCAAATGACGTCAGCATGATCCAGACGGCCCATGTGGGTGTTGGGATAAGCGGCAATGAAGGTTTGCAGGCAGCCAACTCTTCAGATTACTCCATCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-'53-67,'53-62,56-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(5.2=100)
A:
PF127102=HAD=FE(14.1=100)
C2:
PF127102=HAD=PD(8.6=56.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTCCTGTAGACTCCTCA
R:
TGAGCGATGGAGTAATCTGAAGA
Band lengths:
248-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types