RnoEX0013414 @ rn6
Exon Skipping
Gene
ENSRNOG00000034200 | Atp8a1
Description
ATPase phospholipid transporting 8A1 [Source:RGD Symbol;Acc:1309619]
Coordinates
chr14:42125032-42161114:+
Coord C1 exon
chr14:42125032-42125096
Coord A exon
chr14:42146788-42146960
Coord C2 exon
chr14:42160931-42161114
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACCTGTGGTTGGTATTCCAGGGC
3' ss Score
7.04
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GACACTCCTGTAGACTTCTGAGGAGGAACATGGGAATGATCGTTATAAACGAAGGCTCTCTTGAC
Seq A exon
GGCACAAGGGAAACGCTCAGCCGCCACTGCACCACCCTTGGAGACGCTCTCCGGAAGGAGAATGATTTCGCTCTCATAATCGATGGGAAGACCCTCAAATATGCCTTAACCTTCGGAGTCCGGCAGTATTTCCTGGACTTAGCTCTGTCCTGCAAAGCTGTCATTTGCTGCAG
Seq C2 exon
GGTTTCTCCTCTTCAGAAGTCTGAGGTTGTTGAGATGGTTAAGAAACAAGTCAAAGTCATCACGCTTGCCATCGGAGACGGGGCAAATGACGTCAGCATGATACAGACGGCCCACGTTGGTGTGGGGATTAGCGGCAATGAAGGTTTGCAGGCAGCCAACTCTTCAGATTATTCCATTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034200-'28-37,'28-32,32-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(5.4=100)
A:
PF127102=HAD=FE(14.6=100)
C2:
PF127102=HAD=PD(9.0=56.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCCTGTAGACTTCTGAGGA
R:
GCAATGGAATAATCTGAAGAGTTGGC
Band lengths:
244-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]