DreEX0016074 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21266621-21290464:-
Coord C1 exon
chr24:21290400-21290464
Coord A exon
chr24:21272543-21272715
Coord C2 exon
chr24:21266621-21266804
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTGGTTTTCATGCTTCACAGGCA
3' ss Score
8.37
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GTTACTCCTGCAGGCTGGTTTCACATGGCATGTCCCTCATCATCGTCAATGAAGATTCCCTGGAT
Seq A exon
GCAACCAGGGCCACGCTGACGGCTCACTGCTCCTCTCTGGGTGACTCTCTGAGGAAGGAGAACGAGTTGGCGCTCATCATAGACGGACAGACGCTCAAATATGCCCTCTCTTTTGAAGTACGGCAGGCTTTTCTGGACCTTGCGCTGTCCTGTAAGGCCGTCATCTGCTGCAG
Seq C2 exon
AGTTTCACCATTACAGAAGTCGGAGATTGTGGACATGGTGAAAAAGCATGTAAAGGCCATAACGCTGGCTATCGGAGATGGAGCCAACGATGTGGGCATGATACAAACAGCACACGTGGGAGTGGGCATCAGTGGGAATGAAGGCATGCAGGCCACCAACTCATCTGACTACTCCATAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(5.2=100)
A:
PF127102=HAD=FE(14.0=100),PF143361=DUF4392=PU(7.5=8.6)
C2:
PF127102=HAD=PD(8.6=56.5),PF143361=DUF4392=FE(91.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACTCCTGCAGGCTGGTTT
R:
ATGGAGTAGTCAGATGAGTTGGTG
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]