RnoEX0013439 @ rn6
Exon Skipping
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40164003-40305903:-
Coord C1 exon
chr15:40305839-40305903
Coord A exon
chr15:40226855-40227027
Coord C2 exon
chr15:40164003-40164186
Length
173 bp
Sequences
Splice sites
3' ss Seq
TCATTCTTCACTTTTTCCAGGCA
3' ss Score
8.73
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGTACTCCTGTCGGTTGGTGTCACAGAACATGGCCCTTATCCTATTGAAGGAGGATTCTTTAGAT
Seq A exon
GCAACAAGGGCGGCCATCACTCAGCACTGCACAGACCTCGGAAATTTGCTGGGCAAAGAGAATGATGTGGCCCTCATCATCGACGGCCATACCCTGAAGTACGCACTCTCCTTTGAAGTCCGCAGAAGTTTTCTGGACCTGGCGCTCTCGTGCAAAGCAGTCATCTGCTGCAG
Seq C2 exon
AGTGTCCCCTCTGCAGAAGTCTGAGATCGTGGATGTCGTGAAGAAGCGAGTGAAAGCCATCACCCTGGCCATCGGGGACGGTGCCAATGACGTGGGGATGATCCAGACAGCCCATGTAGGGGTCGGGATCAGCGGGAATGAAGGCATGCAGGCTACCAACAACTCAGATTATGCCATCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053-'40-40,'40-34,44-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0070221=Hydrolase=FE(8.2=100)
A:
PF0070221=Hydrolase=PD(10.9=48.3)
C2:
PF127102=HAD=PD(8.6=56.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCTGTCGGTTGGTGTCA
R:
TGCGATGGCATAATCTGAGTTGT
Band lengths:
244-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]