BtaEX6056522 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr12:33841157-33974430:-
Coord C1 exon
chr12:33974361-33974430
Coord A exon
chr12:33897274-33897446
Coord C2 exon
chr12:33841157-33841340
Length
173 bp
Sequences
Splice sites
3' ss Seq
CCCCCCACACCTTGTCTCAGGCC
3' ss Score
5.52
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TCTAGGTTATTCCTGTCGGTTGGTGTCACAGAACATGGCCCTTATCCTACTGAAGGAGGATTCTTTGGAC
Seq A exon
GCCACCCGGGCAGCCATCACCCAGCACTGCGCGGACCTCGGGAGCCTGCTGGGCAAGGAGAACGACGCGGCCCTCATCATCGACGGCCACACCCTCAAGTACGCGCTGTCCTTCGAGGTCCGGAGGAGCTTCCTGGACCTGGCCCTCTCGTGCAAGGCAGTCATCTGTTGCAG
Seq C2 exon
GGTGTCTCCTCTGCAGAAGTCGGAGATAGTGGATGTGGTGAAGAAGCGGGTGAAAGCCATCACCCTGGCCATCGGGGATGGTGCCAACGATGTGGGCATGATCCAGACGGCACATGTGGGTGTAGGCATCAGTGGGAACGAGGGCATGCAGGCCACTAACAACTCGGATTACGCCATCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019529-'42-46,'42-42,43-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(18.5=100)
A:
PF127102=HAD=FE(46.0=100)
C2:
PF127102=HAD=PD(28.2=56.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTGTCGGTTGGTGTCAC
R:
GAGCGATGGCGTAATCCGAG
Band lengths:
244-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]