GgaEX1010129 @ galGal4
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176063448-176141162:+
Coord C1 exon
chr1:176063448-176063512
Coord A exon
chr1:176092902-176093074
Coord C2 exon
chr1:176140979-176141162
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTATACTTCAGGCA
3' ss Score
8.29
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGTACTCTTGCAGACTCATTTCACAGAGCATGTCTCTCATCCTGGTCAATGAAGATTCCCTAGAT
Seq A exon
GCAACAAGAGCTTCTTTGACTCACCACTGCAACAGTCTGGGGGACTCCTTGGGCAAGGAAAATGATATTGCTCTGATTATTGATGGCCATACACTGAAGTATGCCCTTTCATTTGAAGTCAGGCAGAGCTTTCTGGACTTGGCACTCTCCTGTAAAGCAGTCATTTGTTGCAG
Seq C2 exon
AGTATCTCCTCTACAGAAGTCTGAAATAGTAGACATGGTAAAGAAACACGTGAATGCCATAACACTTGCCATTGGGGATGGTGCCAACGACGTGGGAATGATCCAGACTGCTCATGTTGGAGTAGGGATCAGTGGCAACGAGGGCATGCAGGCAACCAATTGCTCGGATTATGCCATTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'33-45,'33-41,36-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(5.2=100)
A:
PF127102=HAD=FE(14.0=100)
C2:
PF127102=HAD=PD(8.6=56.5)
Main Skipping Isoform:
ENSGALT00000027641fB5306
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTGCAGACTCATTTCACAGA
R:
GCAATGGCATAATCCGAGCAA
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]