MmuEX0006945 @ mm10
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:59860130-59998065:-
Coord C1 exon
chr14:59998001-59998065
Coord A exon
chr14:59925007-59925179
Coord C2 exon
chr14:59860130-59860313
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCACTTTTTCAAGGCA
3' ss Score
7.91
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTATTCCTGTCGGTTGGTGTCGCAGAACATGGCCCTTATCCTATTGAAGGAGGACTCTTTAGAT
Seq A exon
GCAACAAGGGCGGCCATCACTCAGCACTGCACAGATCTTGGAAATTTGCTGGGCAAAGAGAACGATGTGGCCCTCATCATCGATGGCCATACCCTGAAGTATGCACTCTCCTTTGAAGTCCGCAGAAGTTTCCTGGACCTGGCGCTCTCATGCAAAGCTGTCATCTGCTGCAG
Seq C2 exon
AGTGTCCCCTCTGCAGAAGTCTGAGATCGTGGATGTTGTGAAGAAGCGAGTGAAAGCCATCACCCTGGCCATCGGAGACGGTGCCAATGACGTGGGGATGATCCAGACAGCCCACGTAGGGGTCGGGATCAGCGGGAACGAGGGAATGCAGGCTACCAACAACTCAGATTATGCCATCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'49-44,'49-39,51-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(5.2=100)
A:
PF127102=HAD=FE(14.0=100)
C2:
PF127102=HAD=PD(8.6=56.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCTGTCGGTTGGTGTCG
R:
TGCGATGGCATAATCTGAGTTGT
Band lengths:
244-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types