BtaEX0005320 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37049076-37061668:+
Coord C1 exon
chr2:37049076-37049184
Coord A exon
chr2:37049447-37049548
Coord C2 exon
chr2:37061458-37061668
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAAATATGTGATTTTTTCAGTAT
3' ss Score
6.16
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
CTGGCAGAGAGAGACAAGAATAAGAAACTTTGGAGGGCGCCTTCAAGGAGAAGTAGCATATTATGCTCCATGTGGAAAGAAACTTAGGCAGTACCCTGAAGTAATAAAG
Seq A exon
TATCTCAGCAGAAATGGAATAATGGATATCTCAAGGGACAATTTCAGCTTCAGTGCAAAAATAAGAGTGGGTGACTTCTATGAAGCCAGAGATGGACCGCAG
Seq C2 exon
GGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCCCGTATCAGGGCAATGGAAGGTCGTAGAGGAAGACCACCAAATCCAGATAGACAGCGAGCAAGAGAGGAATCCAGGATAAGACGTCGGAAAGGTCGGCCTCCAAATGTTGGCAGCACTGAATTTCTAGATAACACAGATGCCAAATTGCTAAGAAAACTGCAAGCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.567
Domain overlap (PFAM):
C1:
PF0142914=MBD=FE(48.0=100)
A:
PF0142914=MBD=PD(32.0=70.6)
C2:
PF0142914=MBD=PD(3.8=2.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAAACTTTGGAGGGCGCC
R:
AGAAATTCAGTGCTGCCAACA
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development