HsaEX0007738 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160268846-160284930:-
Coord C1 exon
chr2:160284822-160284930
Coord A exon
chr2:160284452-160284553
Coord C2 exon
chr2:160268846-160269056
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAAATATGTGATTTTTTCAGTAT
3' ss Score
6.16
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
CTGGCAGAGAGAGACAAGAATAAGAAACTTTGGAGGGCGCCTTCAAGGAGAAGTAGCATATTATGCTCCATGTGGAAAGAAACTTAGGCAGTACCCTGAAGTAATAAAG
Seq A exon
TATCTCAGCAGAAATGGAATAATGGATATCTCAAGGGACAATTTCAGCTTCAGTGCAAAAATAAGAGTGGGTGACTTCTATGAAGCCAGAGATGGACCGCAG
Seq C2 exon
GGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGAAGGTCGTAGAGGAAGACCACCAAATCCAGATAGACAACGAGCAAGAGAGGAATCCAGGATGAGACGTCGGAAAGGTCGACCTCCAAATGTTGGCAATGCTGAATTCCTAGATAACGCAGATGCAAAGTTGCTAAGAAAACTGCAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.562
Domain overlap (PFAM):
C1:
PF027249=CDC45=FE(30.3=100),PF054707=eIF-3c_N=FE(23.5=100),PF041477=Nop14=FE(29.0=100),PF0142914=MBD=FE(48.0=100)
A:
PF027249=CDC45=PD(0.1=0.0),PF054707=eIF-3c_N=FE(22.2=100),PF041477=Nop14=PD(6.5=22.9),PF0142914=MBD=PD(33.3=71.4)
C2:
PF0142914=MBD=PD(3.8=2.8)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAAACTTTGGAGGGCGCC
R:
AGGAATTCAGCATTGCCAACA
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)