GgaEX0019016 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36087192-36092889:-
Coord C1 exon
chr7:36092781-36092889
Coord A exon
chr7:36092409-36092510
Coord C2 exon
chr7:36087192-36087402
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAAATATGTGATTTTTTCAGTAT
3' ss Score
6.16
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CTGGCAAAGAGAAACCCGAATAAGAAACTTTGGTGGCCGTCTTCAGGGAGAAGTAGCGTATTTTGCACCTTGTGGAAAGAAGCTGAGGCAATATCCTGAAGTAGTAAAG
Seq A exon
TATCTCAGCAGAAATGGAATAATGGATATCTCAAGGGACAATTTCAGCTTCAGTGCAAAAATAGGAGTGGGTGACTTCTATGAAGCCAGAGATGGACCGCAG
Seq C2 exon
GGCGTGCAGTGGTGTCTTCTGAAGGAGGAGGAAGTCGTTCCCTGCATCAGAGCTATGGAAGGGCGTAGAGGACGACCACCAAATCCAGACAGGCAGCATTCTAGAGAGGAGTCAAGAATGAGACGTCGCAAAGGCCGACCTCCAAATGTTGGAAGCACTGAATTTCTAGACAGCACTGATGCGAAGCTTTTAAGAAAGCTACAGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.563
Domain overlap (PFAM):
C1:
PF0142914=MBD=FE(67.9=100)
A:
PF0142914=MBD=PD(32.0=70.6)
C2:
PF0142914=MBD=PD(3.8=2.8)
Main Inclusion Isoform:
ENSGALT00000020542fB2275
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAAAGAGAAACCCGAAT
R:
GCCTTTGCGACGTCTCATTCT
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]