DreEX0016655 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11724147-11725349:+
Coord C1 exon
chr6:11724147-11724255
Coord A exon
chr6:11724518-11724619
Coord C2 exon
chr6:11725133-11725349
Length
102 bp
Sequences
Splice sites
3' ss Seq
TATTATTCTCTCTTCTGTAGTAT
3' ss Score
8.38
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
TTGGCAAAGAGAGACCAGGATAAAAACGGTGGCCGGTCGGCTGCAGGGAGATGTTGCGTATTACTCCCCGTGCGGCAAGCGACTGCGACAGTACCCAGATGTCGTAAAG
Seq A exon
TATCTGTCCAGATACGGAATAACTGACATCACGCGTGATAATTTTAGCTTCAGTGCAAAAATAAGGGTTGGTGACTTCTATGAAGCCAGAGAAGGACCCCAG
Seq C2 exon
GGTCTGCAGTGGACTCTTCTGAATGAGGAAGAGGTCATCCCTCATATATTGGCCATGGAGGGGCGGCGAGGTCGCCCGCCCAACTCTGACCGCCAGCAGAGGGGCAGCAGCGAGGGCTCGGGCAGTCGGCGCAGAAAGGGTCGCCCTCCGAATCTAGGAGAGAACGAATTCCCAAGCCCCTCCGAAGCTAAACTACTGCGCAAACTCGAGGCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.742
Domain overlap (PFAM):
C1:
PF0142914=MBD=FE(48.6=100)
A:
PF0142914=MBD=PD(32.4=70.6)
C2:
PF0142914=MBD=PD(23.1=20.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGATAAAAACGGTGGCC
R:
CTCTCCTAGATTCGGAGGGCG
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]