HsaEX0007738 @ hg38
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159412335-159428419:-
Coord C1 exon
chr2:159428311-159428419
Coord A exon
chr2:159427941-159428042
Coord C2 exon
chr2:159412335-159412545
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAAATATGTGATTTTTTCAGTAT
3' ss Score
6.16
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
CTGGCAGAGAGAGACAAGAATAAGAAACTTTGGAGGGCGCCTTCAAGGAGAAGTAGCATATTATGCTCCATGTGGAAAGAAACTTAGGCAGTACCCTGAAGTAATAAAG
Seq A exon
TATCTCAGCAGAAATGGAATAATGGATATCTCAAGGGACAATTTCAGCTTCAGTGCAAAAATAAGAGTGGGTGACTTCTATGAAGCCAGAGATGGACCGCAG
Seq C2 exon
GGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGAAGGTCGTAGAGGAAGACCACCAAATCCAGATAGACAACGAGCAAGAGAGGAATCCAGGATGAGACGTCGGAAAGGTCGACCTCCAAATGTTGGCAATGCTGAATTCCTAGATAACGCAGATGCAAAGTTGCTAAGAAAACTGCAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.558
Domain overlap (PFAM):
C1:
PF027249=CDC45=FE(30.3=100),PF041477=Nop14=FE(29.0=100),PF0142914=MBD=FE(48.0=100)
A:
PF027249=CDC45=PD(0.1=0.0),PF041477=Nop14=PD(6.5=22.9),PF0142914=MBD=PD(33.3=71.4)
C2:
PF0142914=MBD=PD(3.8=2.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAAACTTTGGAGGGCGCC
R:
AGGAATTCAGCATTGCCAACA
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development