BtaEX0005323 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37146116-37150463:+
Coord C1 exon
chr2:37146116-37146156
Coord A exon
chr2:37146396-37146539
Coord C2 exon
chr2:37150319-37150463
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCAGACATTATTTTCTTTAGTAT
3' ss Score
3.58
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AAACCTAAAAGAGATGACTCCAAGGACCTAGCTCTTTGCAG
Seq A exon
TATGATCCTTACTGAAATGGAAACTCATGAGGATGCATGGCCTTTTCTACTTCCTGTAAACTTGAAACTTGTTCCTGGTTATAAGAAAGTTATTAAGAAGCCTATGGATTTTTCCACAATTAGAGAGAAATTAAGTAGTGGACA
Seq C2 exon
GTACCCAAACCTTGAAACTTTTGCTCTAGATGTCAGGCTTGTTTTTGACAACTGTGAAACATTTAATGAAGATGATTCTGATATAGGCAGAGCTGGCCACAGTATGAGAAAGTATTTTGAAAAAAAGTGGACAGATACTTTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=7.1)
A:
PF0043920=Bromodomain=FE(57.8=100)
C2:
PF0043920=Bromodomain=PD(39.8=67.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTAAAAGAGATGACTCCAAGGA
R:
TTCAAAATACTTTCTCATACTGTGGC
Band lengths:
162-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development