GgaEX0019029 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36053283-36055500:-
Coord C1 exon
chr7:36055241-36055500
Coord A exon
chr7:36054409-36054552
Coord C2 exon
chr7:36053283-36053798
Length
144 bp
Sequences
Splice sites
3' ss Seq
TAAATCCTTATTTTATTTAGCAT
3' ss Score
4.53
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCAAGTGGTCAAACTCTAAAATTAAAAAAACTTCAAATAAAAGGAAAAAAAAGTAATGAACAAAAGAGAGGCAGGAAATTACCAGGAGATACAGAAGATGAAGACTCTGCGACTACTAGTACCTCATTAAAAAGAGGGAAAACAGAACCTAAGAAAAGGAAAATGGATGAAAGTGTTTCTGTAAGCCAAGGAAAACAAGAAAATTTCACTGCTATAAAGAAACCTAAAAGAGATGACTCCAAGGACCTGGCTATATGCAG
Seq A exon
CATGATTCTCTCAGAATTGGAAACTCATGAGGATGCTTGGCCTTTCTTACTTCCTGTAAACTTGAAACTTGTTCCTGGTTATAAGAAAGTTATTAAAAAGCCTATGGACTTTTCCACAATTAGAGACAAGCTAACTAGTGGACA
Seq C2 exon
GTACCCCAATGTTGAAGCATTTTCGCTAGATGTCAGGCTTGTTTTTGACAACTGTGAAACCTTTAATGAAGATGATTCTGACATAGGCAGGGCTGGCCACAACATGAGGAAATATTTTGAAAAAAAATGGACGGAGATTTTCAAATTGAGCTGAAGTTACCAGCACTCATTTTTTCCCCTTAAATGAGGACTGATGAGACCAGCAATGTGAACATGAAAGTGCAAGGCTCCTGCATAACTAGTGACTGTTCTTCTTCCTTAGAAGTATCACAAAAAAAGTGGTATTAGTTCTAAAGGCTTCACTCCTACAGCAACCATGGCCCCTTGGTTCTTGGTTTGTATGTTTTAACAAACTAATTTAGGTAGAACAGGGAAGCACACCCAAAGAATTTCAAAGAAAGGGGTGTTATAGTGCAATAGCAATTTAAAATATATCAAAACGCACTGAATATTCAACCACCAGAGCTCTACTCGGGAAAATGGTTCTTTTTCCCTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=1.1)
A:
PF0043920=Bromodomain=FE(57.8=100)
C2:
PF0043920=Bromodomain=PD(39.8=63.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGGACCTGGCTATATGCA
R:
GCAGGAGCCTTGCACTTTCAT
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]