DreEX6020939 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11765777-11767686:+
Coord C1 exon
chr6:11765777-11766075
Coord A exon
chr6:11766154-11766297
Coord C2 exon
chr6:11767332-11767686
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGTGGTTTTGCGTTTCGCAGGAT
3' ss Score
9.24
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
GCAAGTGGTCAGTCACCAAAATCAAAATCGAAGACCCCGAATCGCACAGCACCAGCCAGCGGAGGGAAAAAGACAGCAGAAGCAGCCAAGAAAAGCAAGAAGCAGGCAGAAACGGGTGAAGAAGAGGAGGCTACCAGCAGCACCAACAGCACCCCAAAGAAAGCAACCGCCGCCTCCAGCCAGAACAAGAAGAACAGCGCATCCACCCCAAACCAGATGGCTCCCAAACCGGACAGTCCCGCCTGCGTGAAAAGAGCCAAAACAGCCCGGGACAACAACCGCGACCTGGGGCTGTGCAG
Seq A exon
GATTCTGTTGGCTGAACTGGAACGTCATCAGGACGCCTGGCCTTTCCTCAATCCTGTAAACCTCAAGTCTGTCCCAGGGTACCGCAAAGTCATTAAAAAACCCATGGACTTCTCCACCATCCGGGAGAAACTCGTCAGCAGCCA
Seq C2 exon
GTATCAGAATTTAGAAACGTTCATCATCGACGTCAATCTGGTGTTCGACAACTGCGAGAAGTTCAACGAGGACAATTCGGACATCGGGCGCGCGGGACACAACATGAGGAAGTTCTTCGAGAAGAGGTGGACTGAGCTGCTCAAGCAGACTAACTGAGTCATTTCAACACATCAACACCCAAAGAGACACAAGACAGAGGGTGTCATGTGCAATAGCATTTCCTTCAGTAAAAGAGAGAGAGAGAGAGAAATCGCACTGAAATTTCAACCGTCAGAGCTGTATGTACTAAGGAGAAACGGAAAAAAAGAGAAAAAAAAATCCCTTTCCACTACTTGTAAATATCTTTTTATTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'53-47,'53-46,54-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.041 C2=0.038
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=1.0)
A:
PF0043920=Bromodomain=FE(57.8=100)
C2:
PF0043920=Bromodomain=PD(39.8=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCACCCCAAAGAAAGCA
R:
CCGATGTCCGAATTGTCCTCG
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]