HsaEX6016169 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160175490-160182429:-
Coord C1 exon
chr2:160182164-160182429
Coord A exon
chr2:160181322-160181465
Coord C2 exon
chr2:160175490-160176929
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCAAACATTATTTTCTTTAGTAT
3' ss Score
4.82
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCAAGTGGTCAAACTCTAAAAATCAAAAAACTTCATGTCAAAGGAAAAAAGACTAATGAGTCAAAGAAAGGCAAGAAGGTAACTTTAACAGGAGATACTGAAGATGAAGACTCTGCATCTACAAGTAGTTCACTAAAAAGAGGAAACAAAGACCTCAAGAAAAGAAAAATGGAGGAAAACACTTCTATTAACTTGTCAAAACAAGAAAGTTTTACTTCAGTTAAGAAACCTAAAAGAGATGACTCCAAGGACCTAGCTCTTTGCAG
Seq A exon
TATGATTCTGACTGAAATGGAAACTCATGAGGATGCATGGCCTTTTCTACTTCCTGTAAACTTGAAACTTGTTCCTGGTTATAAGAAAGTTATTAAGAAGCCTATGGATTTTTCCACAATTAGAGAGAAACTAAGTAGTGGACA
Seq C2 exon
GTATCCAAACCTTGAAACCTTTGCTCTAGATGTCAGGCTTGTTTTTGACAACTGTGAAACATTTAATGAAGATGATTCTGATATAGGCAGAGCTGGCCACAATATGAGGAAGTATTTTGAAAAAAAGTGGACAGATACTTTCAAAGTGAGCTGAAGTTATAATAATCTCTTTATTTTTTTCCTTCTAAACAAGGACAAATGAGACCAGCAATGTGAACTGTATTTACATAAACGTGCAAGGCACATACATAATGACTTTCTTTTTCCTTAAGTATAAAAAAAAAGTATCAGAAGAATGATACCATTTTTAAAGGCTTCATTCCTACAACAACCAAGGCCCTCGGTTATTGGTTTGTGTGATTTATCAGCTAATTTAGGTAGAACAGGGAAGCACACCCAAAGAATTTTCAAAGGAAAGGGTGTTATAGTGCAATAGCAATTAAAATATATCAAATCGCACTGAATACTCAACACCAGAGCTCTAATGTGGGAAATGGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'58-57,'58-55,59-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=1.1)
A:
PF0043920=Bromodomain=FE(57.8=100)
C2:
PF0043920=Bromodomain=PD(39.8=63.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGACCTAGCTCTTTGCA
R:
ACAGTTCACATTGCTGGTCTCA
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)