RnoEX0014187 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45968825-45971372:-
Coord C1 exon
chr3:45971107-45971372
Coord A exon
chr3:45970867-45971010
Coord C2 exon
chr3:45968825-45970247
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCCAACATTGTGTTCTTCAGCAT
3' ss Score
6.49
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCAAGCGGTCAGAGTATAAAAATTAAAAAAATTCATATCAAAGGAAAAAAGACAAATGAATCCAAGAAAAGCAAGAAAGGAAACGTCGCTGGGGACACTGAAGACGAAGACTCCACTTCCACAAGCAGTTCACTCAAACGAGGAAGCAAAGATCTCAAAAAGAGGAAAATGGAGGAAAACACTTCCCTCCACTTGTCAAAAGCAGAAAGTGCTACTTCCGTTAAGAAACCGAAAAAAGAAGAGTGCAAGGACCTGGCTCTCTGCAG
Seq A exon
CATGATCCTGACTGAAATGGAAACGCATGAGGACGCCTGGCCCTTTCTGCTTCCGGTCAACCTGAAGCTCGTACCCGGCTACAGGAAGGTTATTAAGAAGCCTATGGATTTTTCTACAATTAGAGAAAAACTAAATAATGGACA
Seq C2 exon
GTATCCCAACTTTGAGACCTTTGCTCTAGACGTCAGGCTTGTTTTTGACAACTGTGAAACATTTAATGAAGATGACTCGGACATAGGCAGAGCTGGCCACAGTATGCGAAAATACTTTGAAAAAAAGTGGACAGATACCTTCAAAGTGAGCTGAAGTTATAATCTTCTTTTTCTCTTTTTTTCCTTTTGAACAAGGACAAACAAGACCAGCGATGTGAACTTCATTCACACAGATGTGCAAGGCACATGCTTATTAACTTTTTCCTTAAAATCGGTATGTGTGTATGTCTGTATGTACACACGTGTACATGTGCACATACACACACATATATTTAAGAAGGATGAGCAGAATGACACCAGTTTTAGAGGCTTCTTCACTCCTGCAGCCGAGACCATTGGTCGCTGGTTTGTGTGATTCATCAACTAATCTAGGTAGAACAGGGAAGCAAGCGCACCCAAAGACTTTTCCAAGGAAAGGGTGTTAGAGTGCAATAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'61-65,'61-64,63-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.629 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=1.1)
A:
PF0043920=Bromodomain=FE(57.8=100)
C2:
PF0043920=Bromodomain=PD(39.8=63.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCACTTCCACAAGCAGT
R:
AGCTCTGCCTATGTCCGAGTC
Band lengths:
252-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]